1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ggagttgatgggtgttcccttatgatattatgctgagaccttgtgggttgtaagattaactctgaatgattgttactgtcatttggtttccttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGA
species | Glycine max |
transcript | GLYMA08G04890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAG GATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAEST: gi|151396135|gb|EV266012.1|EV266012
genomic: CTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
EST: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAG GATTTTGGGATTAAATATAATATGGAAAATGGTGGACCTGCACCAGAGGGAEST: gi|7146991|gb|AW508913.1|AW508913
genomic: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
EST: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAG GATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAEST: gi|14259175|gb|BG882083.1|BG882083
genomic: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
EST: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAG GATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAEST: gi|21675862|gb|BQ628213.1|BQ628213
genomic: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
EST: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAG GATTTTGGGATTAAATATEST: gi|12773224|gb|BG238151.1|BG238151
genomic: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATAT
EST: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAA GATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAEST: gi|33390415|gb|CA853610.1|CA853610
genomic: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
EST: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAG GATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAEST: gi|254323080|gb|GR839993.1|GR839993
genomic: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
EST: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAG GATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
genomic: CAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGgtgagtattg ... cttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGA
ggttgtaagattaactctgaatgattgttactgtcatttggtttccttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGA
gattaac putative branch site (score: 2)
tttccttgtt putative PPT
taagattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagttgatgggtgttcccttatgatattatgctgagaccttgtgggttgtaagattaactctgaatgattgttactgtcatttggtttccttgttgcagGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGA
- - - - -gggtgtt
- - - - - - - - -ccttatg
- - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtc