1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttccattgctttactctcaatcattttggttatactattttgtttgatgattcttacagctctaattattggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACAGGAAGTTCTTCTTCTGGATGCAG
species | Glycine max |
transcript | GLYMA08G03080.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAG GTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACEST: gi|254344647|gb|GR851237.1|GR851237
genomic: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAGgttccattgc ... ggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
EST: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAG GTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACEST: gi|27446099|gb|CA953222.1|CA953222
genomic: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAGgttccattgc ... ggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
EST: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAG GTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACEST: gi|298184120|gb|HO029333.1|HO029333
genomic: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAGgttccattgc ... ggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
EST: GATCAGATAATATTTCCCGACGAGGCTATTTTTGAGAAG GTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACEST: gi|120532595|gb|EH260728.1|EH260728
genomic: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAGgttccattgc ... ggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
EST: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAG GTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACEST: gi|27446181|gb|CA953304.1|CA953304
genomic: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAGgttccattgc ... ggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
EST: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAG GTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACEST: gi|6072781|gb|AW102168.1|AW102168
genomic: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAGgttccattgc ... ggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
EST: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAG GTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
genomic: GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAGgttccattgc ... ggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGAC
ttggttatactattttgtttgatgattcttacagctctaattattggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACAGGAAGTTCTTCTTCTGGATGCAG
tatactattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccattgctttactctcaatcattttggttatactattttgtttgatgattcttacagctctaattattggttgcatagGTTAATCAAACATCCGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACAGGAAGTTCTTCTTCTGGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG