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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtagtctgtaatctaacttctcaattacttgtccagaaatcataaatattatttatgcaagtagattgtgacacattacgctgtctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA

Basic information

species Glycine max
transcript GLYMA08G02960.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 3'ss of exon 5
gtactgtagtctgtaatctaacttctcaattacttgtccagaaatcataaatattatttatgcaagtagattgtgacacattacgctgtctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA
                |   ||  ||  || || |    ||   || |     ||  | |  ||| |    |        || |     || || ||  | ||  | |  | |  |||||||||||||| |||||||||| ||||| ||||| || || || ||||| ||||| || ||||| |||||||| ||||| ||||| || ||||| |||||
---------------gttcgac--cttgatcacatacatag---tcctttgggttggtaa--caactgcgatcatctgtcttgcatatacttatcgtgctttgattttg-gtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGGTGGAGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAA

upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G415007_T01 (Zea mays), 3'ss of exon 5
gtactgtagtctgtaatctaacttctcaattacttgtccagaaatcataaatattatttatgcaagtagattgtgacacattacgctgtctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA
                  |   | |||  | ||| || |   |    |   | || ||| | |  |||  | ||    |||   |||    |||   ||||    |  || ||| |||||||||| ||| | ||||||||||| |||||||| || ||||| || || ||||| || ||||| |||||||| || || |||||||| ||||| |||||
----------------gttcggtgctctttcactagtgctatagc--tgggtgtttttttttcttgtaagtggt----catcctgct--tacataagtgtgattttgccttgatgcagATATCCTCCTCCTTGATGTGGCTCCTCTCACCCTGGGTATTGAGACCGTCGGTGGAGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAA

upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G114793_T01 (Zea mays), 3'ss of exon 5
gtactgtagtctgtaatctaacttctcaattacttgtccagaaatcataaatattatttatgcaagtagattgtgacacattacgctgtctcattgttgtg-tggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA
             |   || |  | |    | ||  |     | |  ||  | || ||| ||   |||  |  |    ||||  |||    |||   |||| |   |  || ||| |||||||||| ||| | |||||||||||||||||||| || || || || || ||||| || ||||| |||||||| || || |||||||| ||||| |||||
-----------gttcggctcatgttttttgtgctcttttgccactggtaggtgttttttttg---gtaagtgat----cattctgct--tacataagtgtgatttttgccttgatgcagATATCCTCCTCCTTGATGTGGCTCCCCTCACCCTGGGTATCGAGACCGTCGGTGGAGTCATGACCAAGTTGATCCCGAGGAACACTGTCATCCCGACCAA

upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 3'ss of exon 5
gtactgtagtctgtaatctaacttctcaattacttgtccagaaatcataaatattatttatgcaagtagattgtgacacattacgctgtctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA
                            |||| ||        | |||            | |||    || ||   |  ||  |||  ||| ||||| ||| | |   || ||| ||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||| |||||
--------------------------gtattatttccatcctcaccatcttcgcagaaccttcaatggcatggttgaaagtt-tgctaactc-ttgttctgttgtttcatgtatc-agATATCCTTCTCTTGGATGTGGCTCCACTCACTCTTGGTATTGAAACGGTTGGCGGGGTGATGACCAAATTGATTCCCAGAAACACCGTTATCCCAACCAA

upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 5
gtactgtagtctgtaatctaacttctcaattacttgtccagaaatcataaatattatttatgcaagtagattgtgacacattacgctgtctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA
                  || | | || |||   | || |  |   ||| ||     || ||||      |  |||   ||   | |      ||| | ||    |   |  || ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||||
-----------------gtatcatttccattctctatcaatgaccgatagatgg---ttgtgcat-cgagtgttgatgaat---ggtagacatttgatatgatatttgttccatgcagATATTCTTCTCTTGGATGTGGCTCCGCTCACTCTTGGAATTGAAACCGTTGGTGGGGTGATGACCAAGTTGATTCCTAGGAACACTGTTATCCCGACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtagattgtgacacattacgctgtctcattgttgtgtggctctctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCCAGAAACACTGTTATCCCTACCAA
                                         ctctct  CT-rich tract