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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacattttttttttttagttttaaatgcttcagaatcttatcaacattctttcattaaccttgaagtttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAG

Basic information

species Glycine max
transcript GLYMA08G02850.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------------------------------------------------------------gtaagaaacattttt----tttttttagttttaaatgcttcagaatcttat-caacattctttca--ttaaccttgaagt--ttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAG
                                                                                        |  | || ||        ||| || |  | | | |   | | ||||| |    | |  || | |   | | | || | |   |   ||| | |  ||||||  ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||| || || ||||| ||| | ||||||| |||||||| | 
gcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6718887|gb|AW306534.1|AW306534
EST:     TTAAAAAGGTTTTTAAGGACACATCAGAATTGAAAATGAATGCAACTAAG                         TCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCA
genomic: TTAAAAAGGTTTTTAAGGACACATCAGAATTGAAAATGAATGCAACTAAGgtaagaaaca ... atcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCA
EST: gi|58018638|gb|CX705380.1|CX705380
EST:     TTAAAAAGGTTTTTAAGGACACATCAGAATTGAAAATGAATGCAACTAAG                         TCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCA
genomic: TTAAAAAGGTTTTTAAGGACACATCAGAATTGAAAATGAATGCAACTAAGgtaagaaaca ... atcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacattctttcattaaccttgaagtttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAG
            cattaac  putative branch site (score: 2)
                                      ttttcttatcgtttc  putative PPT
                    ttgaagtttatcatta  TA-rich tract