1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatataatatgtaattcatttaacacaacttataatttataaagtgatgaactggttaactttctagattctgatgaagtttcttgatcctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTATTGTTTGGTTACCCCTGTAATATTTATATTCCGAAGCATAAGCTTGTCTT
species | Glycine max |
transcript | GLYMA08G02420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTATEST: gi|193662848|gb|FK604840.1|FK604840
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
EST: GTTCCGTAAAAAGCTTCCAGAG ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTATEST: gi|7286248|gb|AW598735.1|AW598735
genomic: GTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
EST: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTATEST: gi|7286055|gb|AW598542.1|AW598542
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
EST: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
tgatgaactggttaactttctagattctgatgaagtttcttgatcctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTATTGTTTGGTTACCCCTGTAATATTTATATTCCGAAGCATAAGCTTGTCTT
tcctaat putative branch site (score: 2)
ttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatataatatgtaattcatttaacacaacttataatttataaagtgatgaactggttaactttctagattctgatgaagtttcttgatcctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTATTGTTTGGTTACCCCTGTAATATTTATATTCCGAAGCATAAGCTTGTCTT
- - - - - - - - - - - -acacaac
- - - - - - - - - - - - - - - - - - - - - -agtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - -actggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatg