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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattcttatagaattttgagcttcaatgcaggtttatagttttcatagtaaaatactataaatggtatcatttgtttcatgtttatgtggtatttttcatttattttgcagTTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAAC

Basic information

species Glycine max
transcript GLYMA08G02060.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02060.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcattcttatagaattttgagcttcaatgcaggtttatagttttcatagtaaaatactataaatggtatcatttgtttcatgtttatgtggtatttttcatttattttgcagTTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAAC
        |   ||  || ||  | |||  |||||  | | ||        | | |  |  | |    ||| |  |||||||   |      |  | | | |   ||  |||||||| || |||||| |||||||||||||| | ||||| || ||  | |||||||||||||| || |||||||| || || ||||||||||| || ||  || |
-------gtacaatgaaagttaaaactttcatgcacatctctaa-----ggaatgacctgtttttcgaggtctattttgtttttgggaatgattttgtctcttgctt-ctttgcagTCGACGAGGCACTATGTCACCCATATTTGTCATCTCTACATGATATCAATGATGAGCCTGTTTGTCCCAGTCCTTTTAGTTTTGATTTCGAGCAATCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214009194|gb|DB990032.1|DB990032
EST:     GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTG                         TTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATG
genomic: GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTGgtaagcattc ... tattttgcagTTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATG
EST: gi|10231856|gb|BE800744.1|BE800744
EST:     GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTG                         TTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATG
genomic: GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTGgtaagcattc ... tattttgcagTTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATG
EST: gi|9898807|gb|BE607775.1|BE607775
EST:     GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTG                         TTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATG
genomic: GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTGgtaagcattc ... tattttgcagTTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaatggtatcatttgtttcatgtttatgtggtatttttcatttattttgcagTTGATGAGGCATTATGTCACCCATATCTTTCATCACTTCACAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAAC
                                    tttttcatttatttt  CT-rich tract
                                  tatttttcatttattt  TA-rich tract