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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcttcctcttctgtccgagtcaaaattaattgttcacactttctagaagaaggagtttgtactaattttattattccttttatctgtagGGTCTGTGCATGCATGCAG

Basic information

species Glycine max
transcript GLYMA08G01990.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207800546|gb|GD774585.1|GD774585
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|23732520|gb|BU764420.1|BU764420
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|254328214|gb|GR835179.1|GR835179
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|192308244|gb|FK002756.1|FK002756
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|13312651|gb|BG406302.1|BG406302
EST:     GCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: GCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|31461793|gb|CD403821.1|CD403821
EST:     CTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|192299321|gb|FG992499.1|FG992499
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|16105268|gb|BI893008.1|BI893008
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTTTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGTATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|209703865|gb|BW656915.1|BW656915
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG
EST: gi|192302560|gb|FG996296.1|FG996296
EST:     CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGTTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatctgtagGGTCTGTGCATGCATGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacactttctagaagaaggagtttgtactaattttattattccttttatctgtagGGTCTGTGCATGCATGCAG
                         tactaat  putative branch site (score: 1)
                               ttttattattcctttt  CT-rich tract
                     tttgtactaattttat  TA-rich tract