1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaagactgacaggagaaacaatgtctaccatatctcaatctgttgttatattttatgcacctgcttttgtgtatattaaatatttttggccaatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGA
species | Glycine max |
transcript | GLYMA08G01940.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAG AATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGEST: gi|18039609|gb|BM307903.1|BM307903
genomic: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatcc ... caatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGG
EST: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAG AATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGEST: gi|192324802|gb|FK016873.1|FK016873
genomic: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatcc ... caatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGG
EST: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAG AATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGEST: gi|298198506|gb|HO040045.1|HO040045
genomic: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatcc ... caatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGG
EST: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAG AATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGG
genomic: TGCTGCCTTGATGATTCGAGATCATGCTACATATGAACAAAGAGTCAAAGgtagtaatcc ... caatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGG
ttatattttatgcacctgcttttgtgtatattaaatatttttggccaatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGA
ttttgtgtatattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagactgacaggagaaacaatgtctaccatatctcaatctgttgttatattttatgcacctgcttttgtgtatattaaatatttttggccaatgaacagAATATTGTGAAAAATATGCCAAGCCTGAAGATGTTGGAGCTGTACAGGAGGAAAGTTCCAGTGATGATGAGCCGAGTGAAGATGATTATGCCTCTAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG