1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gacaaagagaagcaaaactactagctggtgattcttatacataattggttacataatcttttgaatttacattcatgtatctacttcatggtttgtgcagCTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAG
species | Glycine max |
transcript | GLYMA08G01870.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATG CTGTTGCTAATATGGTGGGCAAGTACTTCCEST: gi|16341565|gb|BI967160.1|BI967160
genomic: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATGgttagtatct ... gtttgtgcagCTGTTGCTAATATGGTGGGCAAGTACTTCC
EST: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATG CTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAGEST: gi|6747047|gb|AW317503.1|AW317503
genomic: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATGgttagtatct ... gtttgtgcagCTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAG
EST: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATG CTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAGEST: gi|31470667|gb|CD412695.1|CD412695
genomic: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATGgttagtatct ... gtttgtgcagCTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAG
EST: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATG CTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAG
genomic: TCCTGGATCAATTGTTACAAATATTCTGCGATACCATGACTATATTAATGgttagtatct ... gtttgtgcagCTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAG
tggttacataatcttttgaatttacattcatgtatctacttcatggtttgtgcagCTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAG
ataatcttttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaaagagaagcaaaactactagctggtgattcttatacataattggttacataatcttttgaatttacattcatgtatctacttcatggtttgtgcagCTGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -aaagagaa
- - - - - - caaaact
- - - - - - - - - - - -gctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acattca