1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atcggaatatgatgcatgtgttatctttcctggagatttataagacttggtgtaaatttttattccacaaattctgattgatacatgactcaatgtacagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTCTCAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCATAGGGTACTTTATCCTAAAACGA
species | Glycine max |
transcript | GLYMA08G01650.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATAGTATTAGCTGCCCGTCGACCACGAGTTACATTACGTGGCACAAAG TTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTCTCAAAGAACCTC
genomic: GAATAGTATTAGCTGCCCGTCGACCACGAGTTACATTACGTGGCACAAAGgtgagtatat ... caatgtacagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTCTCAAAGAACCTC
cttggtgtaaatttttattccacaaattctgattgatacatgactcaatgtacagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTCTCAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCATAGGGTACTTTATCCTAAAACGA
taaatttttattccac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcggaatatgatgcatgtgttatctttcctggagatttataagacttggtgtaaatttttattccacaaattctgattgatacatgactcaatgtacagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTCTCAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCATAGGGTACTTTATCCTAAAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - tgcatgt
- - - - - - - - - - - - - -tcctgga
- - - - - - - - - - - - - - - - - - - - - - -cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgac