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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctagtacaaatttcaatgttcttcaagtgcatttatccctaattatgggatcattcattattgaaaatttggaaaactgaaaaagtttgcaatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA

Basic information

species Glycine max
transcript GLYMA08G00740.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00740.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os08g01760.1 (Oryza sativa), 3'ss of exon 4
gctagtacaaatttcaatgttcttcaagtgcatttatccctaattatgggatcattcattattgaaaatttggaaaactgaaaaagtttgca-atttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA
  || |   || |  |    || |||  || || | |   |||| ||     ||   || | ||    ||||   |    |     |||    ||||  |||||| ||||  ||||||||||||||||| |||||||| ||||| || ||||||||||| || | | |  | ||  | ||  |||| |||||||| |||||
-gtaatcttaaatatacaactcctcacatg-atatgtgggtaatgata----caggtataactgtgcctttgcttacagcattctttttatgcatttccagGAAAGCCAGTGTACATGTATAGTATGGGTGGGCTTGCAGAATATTGCGTTGTGCCAGCCAACGCACTAGCAGTTCTTCCCAACTCTTTGCCATACACAGA

upper sequence: GLYMA08G00740.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G024303_T01 (Zea mays), 3'ss of exon 4
-------------gctagtacaaatt-tcaatgttcttcaagtgcatt----tatccctaattatgggatcatt-cattattgaaaatttggaaaactgaaaaagtttgcaatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA
              |   | || ||  |  ||  || |||    ||      |||   |  |   | || ||   || |||      ||     |||   |||| | | || | |  ||| ||||| |  |||||||||||||||||||||||||| || || |||||||| ||||| ||||   |  | ||  | || |||||| ||||||| |||||
gtaacctgaggaaacagatccacatcatgcatcatcatcagtaacaccacagtattttttttaccgagaacaccacagtataattgcttcaagtaacctgaaaattctcca-tctgcagGGAAACCGGTGTACATGTATAGTATGGGAGGGCTTGCAGAGTATTGTGTTGTCCCAGCCAATGCGCTAGCAGTTCTCCCTGACTCACTGCCATACACAGA

upper sequence: GLYMA08G00740.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g03150.t01 (Vitis vinifera), 3'ss of exon 4
--gctagtac-aaatttcaatgttcttcaagtgcatttatccctaattatgggatcattcattattgaaaatttggaaaactgaaaaa---gtttgcaatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA
    |  ||| ||| ||  || | | |||    |||| ||   | |   |  |   | |   | ||| || | |||    |||||  |   | |     ||| |||| ||||||| || |||||| |||||||| || ||||||||||||||||||||||| ||  ||||| |  |    ||||||||||||||||||||||| ||
tttatcctactaaagttttatatccctca--ctcattgata--tgaccgtctgcctaat-gctcttggaa-tatgggttgctgaagtatgtgctatttttttgtagGGAAACCAGTATTCATGTACAGTATGGGTGGCCTTGCTGAATACTGTGTTGTGCCTGCCCATGGATTAACCAACTTACCAGACTCATTGCCATATACTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329030|gb|GR833402.1|GR833402
EST:     AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG                         GAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
EST: gi|192331064|gb|FK020284.1|FK020284
EST:     AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG                         GAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
EST: gi|192294016|gb|FG987185.1|FG987185
EST:     AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG                         GAAA-CCAGCATACATGTATAGT
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGT
EST: gi|254330134|gb|GR839687.1|GR839687
EST:     AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTG                         GAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG
genomic: AAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga ... caatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgggatcattcattattgaaaatttggaaaactgaaaaagtttgcaatttatagGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGA
     atcattcattattgaa  TA-rich tract