1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatatgccataattgtagttcttaatctttgcattggaggttaaaaaagcatgtattgaagtaaattatagccatcatctgttgtaatttctaactgcagATAAACCAGGAATTGAAGAACTGCATCAATTTTTGGAGTTCCAGCTTCCAAGGCAATGGGCCCCTGTATTTGGTGAGCTTGCCCTTGGTCCTGAAAGGAA
species | Glycine max |
transcript | GLYMA08G00680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATAAATGGGAGTGGATATTTAACTCATGCCATGAATCTCTATTTACGCT ATAAACCAGGAATTGAAGAACTGCAATACAAATTTTTGGAGTTCCAGCTTAEST: gi|208060996|gb|GD857576.1|GD857576
genomic: AATAAATGGGAGTGGATATTTAACTCATGCCATGAATCTCTATTTACGCTgtaaggaact ... ctaactgcagATAAACCAGGAATTGAAGAACTGCA-T-CAA-TTTTTGGAGTTCCAGCTT-
EST: AATAAATGGGAGTGGATATTTAACTCATGCCATGAATCTCTATTTACGCT ATAAACCAGGAATTGAAGAACTGCATCAATTTTTGGAGTTCCAGCTTCCAAEST: gi|208094002|gb|GD894427.1|GD894427
genomic: AATAAATGGGAGTGGATATTTAACTCATGCCATGAATCTCTATTTACGCTgtaaggaact ... ctaactgcagATAAACCAGGAATTGAAGAACTGCATCAATTTTTGGAGTTCCAGCTTCCAA
EST: AATAAATGGGAGTGGATATTTAACTCATGCCATGAATCTCTATTTACGCT ATAAACCAGGAATTGAAGAACTGCATAACAATTTTTGGAGTTCCAGCTTCC
genomic: AATAAATGGGAGTGGATATTTAACTCATGCCATGAATCTCTATTTACGCTgtaaggaact ... ctaactgcagATAAACCAGGAATTGAAGAACTGCAT--CAATTTTTGGAGTTCCAGCTTCC
aaagcatgtattgaagtaaattatagccatcatctgttgtaatttctaactgcagATAAACCAGGAATTGAAGAACTGCATCAATTTTTGGAGTTCCAGCTTCCAAGGCAATGGGCCCCTGTATTTGGTGAGCTTGCCCTTGGTCCTGAAAGGAA
ttctaac putative branch site (score: 1)
tttct CT-rich tract
tattgaagtaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgccataattgtagttcttaatctttgcattggaggttaaaaaagcatgtattgaagtaaattatagccatcatctgttgtaatttctaactgcagATAAACCAGGAATTGAAGAACTGCATCAATTTTTGGAGTTCCAGCTTCCAAGGCAATGGGCCCCTGTATTTGGTGAGCTTGCCCTTGGTCCTGAAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- tatgcca
- - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - -ttggagg
- - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt