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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctattttcatcctaaaattattggcattgcaaatgcttattatttttgtagagtattcaaattgtgtatgtgacttctagaaaaggctgcttgtactgctattatcttatatatgctcatattcttcatgttttattattttaatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC

Basic information

species Glycine max
transcript GLYMA07G40330.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40330.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
--------------gtgagtctattttcatcctaaaattattggcatt-gcaaatgcttatt-atttttgtagagtattcaa-attgtgtatgtgacttctagaaaaggctgcttgtactgctattatcttatatatgctcatattcttcatgttttattattttaatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC
                  ||  |||||  |||| |  | |||    ||     |  ||||||  ||| ||| | || ||||  | ||   ||   |  | || |||      |  ||  || |  | |||| |  |   | |   |  | || |  |     ||   | | ||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||    | |||| |   |||||  ||||||| |    ||| ||||| |
gtaagattttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccata-aatgtataaaaa------caagtgttgttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690670|gb|BM519518.1|BM519518
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|151397206|gb|EV267079.1|EV267079
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|193660468|gb|FK603896.1|FK603896
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|208196775|gb|GD997926.1|GD997926
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|37995961|gb|CF807550.1|CF807550
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|14259347|gb|BG882247.1|BG882247
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|8285571|gb|BE023130.1|BE023130
EST:     CCAGCTTGAA-GGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCT
genomic: CCAGCT-GAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCT
EST: gi|298183837|gb|HO029050.1|HO029050
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACGT                         GCCCACGTTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|193511314|gb|FK470823.1|FK470823
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|10709381|gb|BF009105.1|BF009105
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|20812959|gb|BQ297437.1|BQ297437
EST:     CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACAT                         GCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATgtgagtctat ... aatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctattatcttatatatgctcatattcttcatgttttattattttaatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC
                                         ttttaat  putative branch site (score: 3)
                     atattcttcatgtttt  TA-rich tract