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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattttttttatattactttgtctttatcaattaaatcatattattgctgctgattctttttcttaatgttttttccttctttttttttcagAAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG

Basic information

species Glycine max
transcript GLYMA07G39450.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395965|gb|EV265842.1|EV265842
EST:     AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA                         AAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
genomic: AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCAgtaagcattt ... tttttttcagAAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
EST: gi|298197514|gb|HO044993.1|HO044993
EST:     AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA                         AAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
genomic: AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCAgtaagcattt ... tttttttcagAAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
EST: gi|298174570|gb|HO017793.1|HO017793
EST:     AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA                         AAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
genomic: AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCAgtaagcattt ... tttttttcagAAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
EST: gi|151413214|gb|EV283022.1|EV283022
EST:     AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA                         AAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
genomic: AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCAgtaagcattt ... tttttttcagAAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
EST: gi|7146390|gb|AW508312.1|AW508312
EST:     AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCA                         AAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
genomic: AGGAAAATATTAAATCTCCCGTAATGGAAGGGCTAGATGCTCTAATAGCAgtaagcattt ... tttttttcagAAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattattgctgctgattctttttcttaatgttttttccttctttttttttcagAAAACAAAGAGTTTGACAGTAAATGCCCAACCTGATGTATTTG
                        tcttaat  putative branch site (score: 3)
             ctgattctttttctta  CT-rich tract
                attctttttcttaatg  TA-rich tract