1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttctatgaagggaaaaattacctttccatctgttcatctgttgtataatttgtttggcatacacatgagagaaaaattacctttcataaatatgcagctgttcctgtttctttaactatttctgtttaatttggattatacagGAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGGTGATTTGAAATGCAAAGAAGTTCCCACAAGTTTTGGGTTTGATACAGCA
species | Glycine max |
transcript | GLYMA07G39380.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAG -AGTAAAA-TATGAAAACTCGTGTGATTGG-TGCCCTAAAAC-ATTGATG-EST: gi|7591049|gb|AW706790.1|AW706790
genomic: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAGgttctatgaa ... gattatacagGAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGG
EST: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAG GAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGGEST: gi|254323780|gb|GR836119.1|GR836119
genomic: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAGgttctatgaa ... gattatacagGAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGG
EST: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAC GAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGGEST: gi|208184291|gb|GD986195.1|GD986195
genomic: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAGgttctatgaa ... gattatacagGAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGG
EST: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAG GAGTAAAAATATGAAAACTCGTGTGAT
genomic: GGTGGAGATGACTCAAACACAAATGCATGCCTCCTTGCTGAGCATTTCAGgttctatgaa ... gattatacagGAGTAAAAATATGAAAACTCGTGTGAT
aatatgcagctgttcctgtttctttaactatttctgtttaatttggattatacagGAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGGTGATTTGAAATGCAAAGAAGTTCCCACAAGTTTTGGGTTTGATACAGCA
tttaactatttctgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctatgaagggaaaaattacctttccatctgttcatctgttgtataatttgtttggcatacacatgagagaaaaattacctttcataaatatgcagctgttcctgtttctttaactatttctgtttaatttggattatacagGAGTAAAAATATGAAAACTCGTGTGATTGGGTGCCCTAAAACCATTGATGGTGATTTGAAATGCAAAGAAGTTCCCACAAGTTTTGGGTTTGATACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT