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gtaatcatgtttaaaaaattatcaattcttacttttcttataaccaatcaaattggtttttatgctgatcttttacattttttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTTCAGTATCTGGACTCACTAAGAGGAACAGATG
species | Glycine max |
transcript | GLYMA07G37640.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|23735206|gb|BU765872.1|BU765872
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|207698437|gb|GD680634.1|GD680634
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: ATGGACCAGCCAAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|193564183|gb|FK516694.1|FK516694
genomic: ATGGACCAGCC-AAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGEST: gi|207709321|gb|GD689571.1|GD689571
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGG
EST: ATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|193357955|gb|FK318967.1|FK318967
genomic: ATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: ATGGACCAGCCAAAAAGAA-TTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGEST: gi|208252534|gb|GE043886.1|GE043886
genomic: ATGGACCAGCCAAAA-GAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGG
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|208192712|gb|GD987565.1|GD987565
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|193541839|gb|FK496609.1|FK496609
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|193622272|gb|FK567716.1|FK567716
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATCGGTGCTTGGCTGTTGTCAATEST: gi|207801421|gb|GD775507.1|GD775507
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA ATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATEST: gi|193619692|gb|FK570860.1|FK570860
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAAT
EST: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA GTATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGG
genomic: GATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAAgtaatcatgt ... ttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGG
cttataaccaatcaaattggtttttatgctgatcttttacattttttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTTCAGTATCTGGACTCACTAAGAGGAACAGATG
tcttttacattttttg CT-rich tract
atcttttacatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcatgtttaaaaaattatcaattcttacttttcttataaccaatcaaattggtttttatgctgatcttttacattttttgttcccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTTCAGTATCTGGACTCACTAAGAGGAACAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG