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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttattcaaatgttatttttagcgtttatcttgttttttagtttagtaacttttatttttgctagatttattcgtaacgtatgtatggtgttaattgttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGTG

Basic information

species Glycine max
transcript GLYMA07G37370.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298177749|gb|HO023768.1|HO023768
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTA
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTA
EST: gi|254333784|gb|GR848702.1|GR848702
EST:     G-TGT-CCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|13311837|gb|BG405488.1|BG405488
EST:     GTTGTCCCTGANACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTT-AAATTTA
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTA
EST: gi|7691086|gb|AW759220.1|AW759220
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|298182359|gb|HO026534.1|HO026534
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTT
EST: gi|298177765|gb|HO027318.1|HO027318
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|209728568|gb|BW663568.1|BW663568
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|254333783|gb|GR848701.1|GR848701
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|22541783|gb|BU091626.1|BU091626
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|10231639|gb|BE800527.1|BE800527
EST:     GTTGTCCCTGANACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATGTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|21888794|gb|BQ742007.1|BQ742007
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|6482218|gb|AW201489.1|AW201489
EST:     GTTGTGCCTGAAACACTANATGGGAAGCCCTTTATCAATGCAACA                         CTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|26269536|gb|CA820599.1|CA820599
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGC
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGC
EST: gi|192300324|gb|FG988801.1|FG988801
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
EST: gi|192323856|gb|FK015637.1|FK015637
EST:     GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCA                         GTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT
genomic: GTTGTCCCTGAAACACTAGATGGGAAGCCCTTTATCAATCCAGCAgtatgttatt ... ttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttgctagatttattcgtaacgtatgtatggtgttaattgttaaacgcagGTTCTCTGTGCTTCTTACACTGATGAGGAATTCTTTAAATTTAGATGCAGTG
                                    tgttaattgttaaa  TA-rich tract