1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtccttcagccctttctttggacctggaatattttcacatgcttgcatagttgcttgtaattttccgttatgaacaaatcaatttttctcacatgtttctaatgatggcagCAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAGAACAAACCCTTCCCGATTGAAGTTGCCA
species | Glycine max |
transcript | GLYMA07G37220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: T-CCTGAGCATTATGGGCAGGAGGATCTAATGAGTGCACTTCTAAAACAG CAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCTEST: gi|9205259|gb|BE331483.1|BE331483
genomic: TCCCTGAGCATTATGGGCAGGAGGATCTAATGAGTGCACTTCTAAAACAGgtttgtcctt ... atgatggcagCAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCT
EST: TCCCTGAGCATTATGGGCAGGAGGATCTAATGAGTGCACTTCTAAAACAG CAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCT
genomic: TCCCTGAGCATTATGGGCAGGAGGATCTAATGAGTGCACTTCTAAAACAGgtttgtcctt ... atgatggcagCAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCT
gtaattttccgttatgaacaaatcaatttttctcacatgtttctaatgatggcagCAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAGAACAAACCCTTCCCGATTGAAGTTGCCA
ttctaat putative branch site (score: 2)
aacaaatcaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccttcagccctttctttggacctggaatattttcacatgcttgcatagttgcttgtaattttccgttatgaacaaatcaatttttctcacatgtttctaatgatggcagCAAGAAGGCATGGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAGAACAAACCCTTCCCGATTGAAGTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG