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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgtttgaatgcagctgcagctgtacaactttttaattttactgaactgaaaattaattctctgaaattccagGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTGGTGCTCAGCCATGGTGCTCTCGTCCCACTGTTGGCCCAGTTGAATG

Basic information

species Glycine max
transcript GLYMA07G37180.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37180.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 4
-------------------gtatgttatgtttgaatgcagctgcagctgtacaactttttaattttac-tgaactgaaaatt--------aattctctg--aaattccagGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTGGTGCTCAGCCATGGTGCTCTCGTCCCACTGTTGGCCCAGTTGAATG
                    |       |||| ||    || |    | ||  | || ||    | || |  | |  |  ||        ||| || |   ||| |  |||| || ||||||||||||||||||||||||||||| || || ||  | ||||| || ||  | ||||| ||  |  | ||| || | || ||||||||||
gtgcttatttgaaatttgtttgaagcccgttttaagattgcagactgtatatcatttattggcataacatagattcgaggttttatatgaaatcctttaccaaaatgtagGCTGTCTGGGCTTTGGGAAATGTTGCTGGTGACTCACCCAGATGCCGTGATCTTGTCCTTGGTCATGGGGCCTTGATTCCATTGCTAGCACAGTTGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtacaactttttaattttactgaactgaaaattaattctctgaaattccagGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTGGTGCTCAGCCATGGTGCTCTCGTCCCACTGTTGGCCCAGTTGAATG
                                 aattaat  putative branch site (score: 3)
                                       ttctctg  CT-rich tract
           tttttaattttactga  TA-rich tract