Sequence
atgc intronic sequence ATGC exonic sequence...gcagccccctgctcttgtcatgtctaatgcagctgaaatggcacttttctgcttgtacattttatatatgcatcctttttcaccggtgtttatattgcagCAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
Basic information
species | Glycine max |
transcript | GLYMA07G37040.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G37040.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 7
--gcagccccctgctcttgtcatgtctaatgcagctgaaatggcacttttctgcttgtacattttatatatgcatcctttttcaccggtgtttatattgcagCAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
||| | | || | | || | | | || | | | || ||| | | | | | | | ||| | | ||||||| || || || ||||| ||||||| || || | ||| || || |||||||||||| ||||||||||||||||||| ||||| || ||||| || ||
tgtaagctcgttactttatatactgttattatta-tagtttatcatgtctttagaattatattctggaaac-ctccttactctaccttttcccttgctgcagCATGATTTCTTCCGGAATCTGATGGGTGTTTTTAAAATATGCGAGGACTTGGAAAATGTTGATGGCCTTCACATGATATTCAACATTGTCAAGGGAATCA
upper sequence: GLYMA07G37040.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------------gcagccccctgctcttgtcatgtctaatgcagctgaaatggcacttttctgcttgtacatt-ttatatatgcatcctttttcaccggtgtttatat-tgcagCAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
| | || | ||| | | || | ||| ||| || || | | | | | | | | | | | |||||||||| ||||| | ||||||||||| |||| || || || |||||||||||||| || ||||||||||||||||| | ||| || |||||||||||
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgacgttttagccctttagtatcattgtgtctttttaatgataaaataattcatttttatgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctgcttgtacattttatatatgcatcctttttcaccggtgtttatattgcagCAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
ttgtacattttatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcagccccctgctcttgtcatgtctaatgcagctgaaatggcacttttctgcttgtacattttatatatgcatcctttttcaccggtgtttatattgcagCAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
- - ccccctg
- - - - - - - - -tcatgtc
- - - - - - - - - - - - - - -cagctga
- - - - - - - - - - - - - - - - - - - - - - - ttctgct