1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...accacctcaaagtccactttcagttaccttgggtttcatcattatttatcacttttgttttgcaaaaattcacaccactcttaattgtcttgttccacagTTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACGGCATATATTGGCTGGTCTTGCCTCAGTTGTTGGTGGTTTAAGTGCACCA
species | Glycine max |
transcript | GLYMA07G36720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGATGTTGTAATTGTGCTTGAGCATCAAAATGAAAAGATTCCTTTAAG TTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACGEST: gi|207772670|gb|GD743920.1|GD743920
genomic: AATGATGTTGTAATTGTGCTTGAGCATCAAAATGAAAAGATTCCTTTAAGgtgagtaaat ... tgttccacagTTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACG
EST: AATGATGTTGTAATTGTGCTTGAGCATCAAAATGAAAAGATTCCTTTAAG TTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACGEST: gi|208091027|gb|GD890906.1|GD890906
genomic: AATGATGTTGTAATTGTGCTTGAGCATCAAAATGAAAAGATTCCTTTAAGgtgagtaaat ... tgttccacagTTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACG
EST: AATGATGTTGTAATTGTGCTTGAGCATCAAAATGAAAAGATTCCTTTAAG TTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACG
genomic: AATGATGTTGTAATTGTGCTTGAGCATCAAAATGAAAAGATTCCTTTAAGgtgagtaaat ... tgttccacagTTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACG
ttatcacttttgttttgcaaaaattcacaccactcttaattgtcttgttccacagTTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACGGCATATATTGGCTGGTCTTGCCTCAGTTGTTGGTGGTTTAAGTGCACCA
tcttaat putative branch site (score: 3)
tcttgttcc putative PPT
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accacctcaaagtccactttcagttaccttgggtttcatcattatttatcacttttgttttgcaaaaattcacaccactcttaattgtcttgttccacagTTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACGGCATATATTGGCTGGTCTTGCCTCAGTTGTTGGTGGTTTAAGTGCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-ccacctc
- - - - - - - cactttc
- - - - - - - - - - - - taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacacc