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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagaaaaaaaaactgatgtgttactccattctccttccctttccaatggatgaaaaaacttaaaattggtttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA

Basic information

species Glycine max
transcript GLYMA07G36680.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36680.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G139894_T01 (Zea mays), 3'ss of exon 6
gtagagaaaaaaaaactgatgtgttactccattctccttccctttccaatggat--gaaaaaacttaaaat--tggtttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA
           |||    |    |||||   |   | ||  |||    ||  ||  ||       |||  |  |   | | || |  |||||| |||||  |||| |||||||| |||||||| || || || ||| |||| ||||| || ||||| ||| |||||||||||||||||||||||||||||
---------gtaaatggcacagtttactttgtatcctttagcttcatgatcaatttgatttggtctaatgtcctacatgcctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGATCTGGTGTATTCCCTCAGCTGCAGCAGGTGAAGTATGACTGTAACAAA

upper sequence: GLYMA07G36680.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 5
gtagagaaaaaaaaactgatgtgttactccattctccttccctttccaatggatgaaaaaacttaaaattggtttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA
|||      |||  | ||     |   |    |||  ||    | | | | |      ||  | |  | || ||  |      ||||||||| || ||||| || ||||| || ||||||||||| |||||| |||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||
gtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccagGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctccttccctttccaatggatgaaaaaacttaaaattggtttctttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAA
                                         tttcttt  CT-rich tract
                     atgaaaaaacttaaaa  TA-rich tract