1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tataaattcttatcgtttttggtgacttatttcatcttgaaagtggattgtttgttaaaaaaatttaaaatttcttgaatatttttggttggttttgtagGCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGAAATGTTTTGTCCCATCATAATCAATTAAAAATAGCTTCCTCTCTGAGTA
species | Glycine max |
transcript | GLYMA07G36110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGACAAGTGGCAGGGGTTTTCTTAATATGGCTTCGTCACCTGTCCATCAG GCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGAEST: gi|193398711|gb|FK362491.1|FK362491
genomic: TGACAAGTGGCAGGGGTTTTCTTAATATGGCTTCGTCACCTGTCCATCAGgtacgaatcc ... ggttttgtagGCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGA
EST: TGGCTT-GTCACCTGTCCATCAG GCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGAEST: gi|193403320|gb|FK368580.1|FK368580
genomic: TGGCTTCGTCACCTGTCCATCAGgtacgaatcc ... ggttttgtagGCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGA
EST: TGGCTTCGTCACCTGTCCATCAG GCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGAEST: gi|22523166|gb|BU081977.1|BU081977
genomic: TGGCTTCGTCACCTGTCCATCAGgtacgaatcc ... ggttttgtagGCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGA
EST: TGACAAGTGGCAGGGGTTTTCTTAATATGGCTTCGTCACCTGTCCATCAG GCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGA
genomic: TGACAAGTGGCAGGGGTTTTCTTAATATGGCTTCGTCACCTGTCCATCAGgtacgaatcc ... ggttttgtagGCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGA
gattgtttgttaaaaaaatttaaaatttcttgaatatttttggttggttttgtagGCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGAAATGTTTTGTCCCATCATAATCAATTAAAAATAGCTTCCTCTCTGAGTA
tttgttaaaaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaattcttatcgtttttggtgacttatttcatcttgaaagtggattgtttgttaaaaaaatttaaaatttcttgaatatttttggttggttttgtagGCCAGAAGCATTGATGCCTCAACCCATCCTGTAGATACTATTTCCAATGGAAATGTTTTGTCCCATCATAATCAATTAAAAATAGCTTCCTCTCTGAGTA
- - - - - - - - - -tggtgac
- - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa