1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atcatctgtattgttttagctacttagaggtcccttaattttttgttttaccatggaaaagtacataatggtgtagttgtgctcgctcattgttctgcagGTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGGAAGGATGGGAACAAAACTTTTATATTTCCAAATGGAGCATGCACCAGTT
species | Glycine max |
transcript | GLYMA07G34730.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCACCATTCCAGG GTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGGEST: gi|151395291|gb|EV265162.1|EV265162
genomic: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCACCATTCCAGGgtaagtaatt ... tgttctgcagGTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGG
EST: GAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCACCATTCCAGG GTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGGEST: gi|12688808|gb|BG155144.1|BG155144
genomic: GAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCACCATTCCAGGgtaagtaatt ... tgttctgcagGTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGG
EST: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCACCATTCCAGG GTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGG
genomic: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCACCATTCCAGGgtaagtaatt ... tgttctgcagGTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGG
ttttaccatggaaaagtacataatggtgtagttgtgctcgctcattgttctgcagGTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGGAAGGATGGGAACAAAACTTTTATATTTCCAAATGGAGCATGCACCAGTT
ttgttct CT-rich tract
tacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatctgtattgttttagctacttagaggtcccttaattttttgttttaccatggaaaagtacataatggtgtagttgtgctcgctcattgttctgcagGTGCACCGGGAACCATCTATTCTACCTTTTTAAATGGAATGTCATTTGTGGAAGGATGGGAACAAAACTTTTATATTTCCAAATGGAGCATGCACCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- catctgt
- - - - - - - - - gctactt
- - - - - - - - - - - - - - - -cccttaa
- - - - - - - - - - - - - - - - - - - - - - - - - ccatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctcgc