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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataaaagtttatgatatatatatacacacacacacacttgaaaatgcatgtatctactttctaacattgataaacttgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g15160.1 (Oryza sativa), 3'ss of exon 5
--gtgataaaagtttatgatatatatatacacacacaca-cacttgaaaatgcatgtatctact-----ttctaacattgataaacttgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
       || ||| | |    | ||| |    |       |  ||     | | | | | | ||     || |       ||||| |  |  | |||||||||||||||| |||||||| |||||||||||||| || ||||| ||   | | ||  | ||  ||||| | || || ||||| ||||| || |
gtactgcaacagtatcttgattttatttttgtatttttggccttttgcgtttcttctttatgctgagatttttcctgcaaataaaatgat--tgcagCTCTTGAACCATTTTTCAATGCGGCTGCTTCACAGTTTATCCTTGGCCAGCAAGTTCCATTGACGCTGTGGTTATCTCTTGCTCCGGTTGTGATAG

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G083344_T02 (Zea mays), 3'ss of exon 5
--------gtgataaa--agtttatgatatatat-atacacacacacacacttgaaaatgcatgtatctactttctaacattgataaacttgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
         ||||||     |||   || | ||| ||   | | |   | | ||   |    ||     |  ||   |  || | ||| ||      ||||||| || |||||||||||||| |||||||| ||||| || ||||| ||| || | ||  | ||  | |||||||| ||                 
gtgattctatgataagttgattttctatttctattattatccctctacctcctgtttacttgtgctaagatgtttccagTTTTACAAA-TTACAACACAGCTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTT----------------

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G083344_T03 (Zea mays), 3'ss of exon 5
--------gtgataaa--agtttatgatatatatatacacacacacaca-cttgaaaatgcatgtatctactttctaacattgataaacttgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
         ||||||     |||   || | |||    |  |    ||  | ||   |    ||     |  ||   |  || | ||| ||      ||||||| || |||||||||||||| |||||||| ||||| || ||||| ||| || | ||  | ||  | |||||||| || | ||| || || ||||
gtgattctatgataagttgattttctatttctattattatccctctacctcctgtttacttgtgctaagatgtttccagttttacaaa-ttacaacacagCTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------------------gtgataaaagtttatgatatatatatacacacacacacacttgaaaatgcatgtatctactttcta-acattgataaacttgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
                                                  |  |  ||  | |     ||| | |      | ||| || | | | | |  ||||   |  |  | | || |    || |||||||||||||||||| |||||||||||||| ||||| || || ||||| || || || || ||| | ||  | ||||| || ||||| ||||||||| |||
gtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttattttcttgt-tatacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692862|gb|AW760961.1|AW760961
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|209720817|gb|BW677391.1|BW677391
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCT
EST: gi|120534376|gb|EH262509.1|EH262509
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|23728678|gb|BU762399.1|BU762399
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|7691041|gb|AW759175.1|AW759175
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|207691594|gb|GD675269.1|GD675269
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|13480400|gb|BG509743.1|BG509743
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20448694|gb|BQ252818.1|BQ252818
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCA
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCA
EST: gi|120534368|gb|EH262501.1|EH262501
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|7796788|gb|AW782182.1|AW782182
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20448800|gb|BQ252924.1|BQ252924
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGNTCATACTTGGGCCAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|213587747|gb|DB955609.1|DB955609
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|8669180|gb|BE190287.1|BE190287
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|23063798|gb|BU578627.1|BU578627
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|208296497|gb|GE090115.1|GE090115
EST:     CTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|11412623|gb|BF424634.1|BF424634
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|26269548|gb|CA820611.1|CA820611
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|17519248|gb|BM188290.1|BM188290
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|6481941|gb|AW201212.1|AW201212
EST:     TTCTTTCACTCATACCAATTAAAGC                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
genomic: TTCTTTCACTCATACC-ATTAAAG-gtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
EST: gi|6481941|gb|AW201212.1|AW201212
EST:     TTCTTTCACTCATACCAATTAAAGC                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
genomic: TTCTTTCACTCATACC-ATTAAAG-gtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
EST: gi|7796582|gb|AW781979.1|AW781979
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20498205|gb|BQ273135.1|BQ273135
EST:     GTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: GTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20814778|gb|BQ299256.1|BQ299256
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|17153411|gb|BM143344.1|BM143344
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|15337762|gb|BI498418.1|BI498418
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|193649523|gb|FK597990.1|FK597990
EST:     TCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: TCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|16104872|gb|BI892612.1|BI892612
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|7691923|gb|AW760040.1|AW760040
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|8669191|gb|BE190298.1|BE190298
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|213590584|gb|DB973329.1|DB973329
EST:     CAATGTCTCANTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCA
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacacttgaaaatgcatgtatctactttctaacattgataaacttgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG
                                  attgataaa  TA-rich tract