1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttactccaagatcaagaatatttctttgtatgtcctttgcctttggtggattaatttgtaatatctgtgacacaaatcttgactgtcttacttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGACGGCAAG
species | Glycine max |
transcript | GLYMA07G29500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAG TCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACEST: gi|208275163|gb|GE069775.1|GE069775
genomic: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGgtatacttct ... acttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATAC
EST: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAG TCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACEST: gi|26059786|gb|CA802700.1|CA802700
genomic: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGgtatacttct ... acttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATAC
EST: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAG TCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACEST: gi|24205189|gb|BU964442.1|BU964442
genomic: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGgtatacttct ... acttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATAC
EST: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGTTTATTCAAAG TCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACEST: gi|254328432|gb|GR835397.1|GR835397
genomic: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGgtatacttct ... acttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATAC
EST: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAG TCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATAC
genomic: ATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGgtatacttct ... acttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATAC
ggtggattaatttgtaatatctgtgacacaaatcttgactgtcttacttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGACGGCAAG
gtcttac putative branch site (score: 3)
tcttactttt CT-rich tract
attaatttgtaatatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttactccaagatcaagaatatttctttgtatgtcctttgcctttggtggattaatttgtaatatctgtgacacaaatcttgactgtcttacttttgcagTCCTCCGTGCTACATTCACAACCTAAATCTACAGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGACGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - ctccaag
- - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - -ctttgcc
- - - - - - - - - - - - - - - - - - - - - - tggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaca