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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtttttttcttatttatataaagttttgccagctgctattggatgggaatatctcactgacataagtataactttgaattattgggttgttaattttttagACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTATAGACCAATTCCTTCTGGGGCAATATCTGAGAATGAG

Basic information

species Glycine max
transcript GLYMA07G18470.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18470.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 5
gtagtgtttttttcttatttatataaagttttgccagctgctattggatggga-atatctcactgacataagtataactttgaattattgggttgttaatt-ttttagACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTATAGACCAATTCCTTCTGGGGCAATATCTGAGAATGAG
          |  |  ||  |   ||| || | |  ||   |  | ||  |||    |   | |   || | | ||| |||   |  ||| ||      || |||||||| || |||||||||||||| ||||| ||||| ||||| |||||||||||| | || |||||||| ||||||||||| || ||||||
--------actcccaaatgcactcaaaattgttcttgcctttgcttgaaaggatgcttaagaatttgattaatgtaaatttttgtgcttgtgtcaccttttcttttagACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16282058|gb|BI944813.1|BI944813
EST:     CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG                         ACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTAT
genomic: CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAGgtagtgtttt ... aattttttagACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTAT
EST: gi|192328987|gb|FK021398.1|FK021398
EST:     CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG                         ACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTAT
genomic: CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAGgtagtgtttt ... aattttttagACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTAT
EST: gi|213593823|gb|DB957943.1|DB957943
EST:     CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG                         ACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATANATGAACCTTAT
genomic: CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAGgtagtgtttt ... aattttttagACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTAT
EST: gi|24205788|gb|BU965041.1|BU965041
EST:     CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG                         ACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTAT
genomic: CAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAGgtagtgtttt ... aattttttagACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatatctcactgacataagtataactttgaattattgggttgttaattttttagACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTATAGACCAATTCCTTCTGGGGCAATATCTGAGAATGAG
                                               tttttt  CT-rich tract
               ataagtataactttga  TA-rich tract