1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtatatgcattcatagtcacacatcacatgctcctcaatagacaaggttcaaatgtgcctattcttcaattttttgagtggtgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATCTTGAAGGTCATCAAAGAAGCAGAGTGGGAACCTTGCCTGCACTGGAAT
species | Glycine max |
transcript | GLYMA07G18210.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATEST: gi|31468536|gb|CD410564.1|CD410564
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCTATATAGTGGCAAAAGAGATEST: gi|193644885|gb|FK588747.1|FK588747
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATEST: gi|31309196|gb|CD394399.1|CD394399
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATEST: gi|58022084|gb|CX708825.1|CX708825
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATEST: gi|192327729|gb|FK022036.1|FK022036
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATEST: gi|208031306|gb|GD831640.1|GD831640
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATEST: gi|15812713|gb|BI784988.1|BI784988
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATEST: gi|8669315|gb|BE190422.1|BE190422
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
aatagacaaggttcaaatgtgcctattcttcaattttttgagtggtgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATCTTGAAGGTCATCAAAGAAGCAGAGTGGGAACCTTGCCTGCACTGGAAT
tattcttcaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatatgcattcatagtcacacatcacatgctcctcaatagacaaggttcaaatgtgcctattcttcaattttttgagtggtgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATCTTGAAGGTCATCAAAGAAGCAGAGTGGGAACCTTGCCTGCACTGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC