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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatgcattcatagtcacacatcacatgctcctcaatagacaaggttcaaatgtgcctattcttcaattttttgagtggtgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATCTTGAAGGTCATCAAAGAAGCAGAGTGGGAACCTTGCCTGCACTGGAAT

Basic information

species Glycine max
transcript GLYMA07G18210.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925092|gb|AW831118.1|AW831118
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: gi|31468536|gb|CD410564.1|CD410564
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCTATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: gi|193644885|gb|FK588747.1|FK588747
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: gi|31309196|gb|CD394399.1|CD394399
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: gi|58022084|gb|CX708825.1|CX708825
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: gi|192327729|gb|FK022036.1|FK022036
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: gi|208031306|gb|GD831640.1|GD831640
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAAT
EST: gi|15812713|gb|BI784988.1|BI784988
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
EST: gi|8669315|gb|BE190422.1|BE190422
EST:     CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCAC                         GGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT
genomic: CTATGGTCTGCACTCCAGAAAAGGGGTAACTGGAGAGATGTTTGTTTCACgtaagtatat ... tgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagacaaggttcaaatgtgcctattcttcaattttttgagtggtgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATCTTGAAGGTCATCAAAGAAGCAGAGTGGGAACCTTGCCTGCACTGGAAT
                       tattcttcaatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatatgcattcatagtcacacatcacatgctcctcaatagacaaggttcaaatgtgcctattcttcaattttttgagtggtgtttgatagGGATGGAATTCATCTTACTTCTGAGGGGAGCAATATAGTGGCAAAAGAGATCTTGAAGGTCATCAAAGAAGCAGAGTGGGAACCTTGCCTGCACTGGAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC