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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcataattctcactgttgttttggacagcaattctcactgttatttgcttattcggtgatgctctgatattatgtatgattgtgattcaaatttctgtagGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTCACTTATGATGTTACATCAAAATTGAAAACCAAATTTCTCGGCAACTCAG

Basic information

species Glycine max
transcript GLYMA07G15930.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15930.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 3'ss of exon 5
-tcataattctcactgttgttttggacagcaattctcactgttatttgcttattcggtgatgctctgatattatgtatgattgtga--ttcaaatttctgtagGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTCACTTATGATGTTACATCAAAATTGAAAACCAAATTTCTCGGCAACTCAG
 | |||      |    ||| |       || |   || |   | ||   ||    ||  | | || ||  |        |    |  | |   |   |  || | ||||||||||||||||| |||||||  |||||||||| ||| |||||| |||||||| | |||||||| ||||| ||||||||| | || |||||  
gtaatatccagtatatctgtatgatttttcagtatccaatcacactt--ctacatagtagtac-ctaattctgcaatccttcacaaattcctgctcctttcagATTAGTCATCACCCTCCAATCAGTGCTGCACATGCTGAAAATGAGCATTTCGCTTATGATATCACATCAAAGTTGAAGACCAAATTTTTAGGAAACTCGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727396|gb|BU761727.1|BU761727
EST:     TTATATCAGAGCAG                         GTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC
genomic: TTATATCAGAGCAGgtaagttacg ... atttctgtagGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC
EST: gi|254327936|gb|GR834901.1|GR834901
EST:     AGACTTATGAAATGGTTAACCATGGTGGCATTACATTTATATCAGAGCAG                         GTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC
genomic: AGACTTATGAAATGGTTAACCATGGTGGCATTACATTTATATCAGAGCAGgtaagttacg ... atttctgtagGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC
EST: gi|254332080|gb|GR846283.1|GR846283
EST:     AGACTTATGAAATGGTTAACCATGGTGGCATTACATTTATATCAGAGCAG                         GTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC
genomic: AGACTTATGAAATGGTTAACCATGGTGGCATTACATTTATATCAGAGCAGgtaagttacg ... atttctgtagGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC
EST: gi|19053342|gb|BM732009.1|BM732009
EST:     AGACTTATGAAATGGTTAACCATGGTGGCATTACATTTATATCAGAGCAG                         GTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC
genomic: AGACTTATGAAATGGTTAACCATGGTGGCATTACATTTATATCAGAGCAGgtaagttacg ... atttctgtagGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttattcggtgatgctctgatattatgtatgattgtgattcaaatttctgtagGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTCACTTATGATGTTACATCAAAATTGAAAACCAAATTTCTCGGCAACTCAG
                ctctgat  putative branch site (score: 4)
                                              tttctgt  putative PPT
                     atattatgtatgatt  TA-rich tract