1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccttgagtgtaaaagtgtaaatctacaataactaacattttgctagcatgcttagtttattattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCAC
species | Glycine max |
transcript | GLYMA07G15170.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAAT GGAGGATATAGGGGCTTCTATGCTCGCAATEST: gi|151396687|gb|EV266560.1|EV266560
genomic: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAATgtacgtgaat ... tgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAAT
EST: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAAT GGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAAEST: gi|208034653|gb|GD834227.1|GD834227
genomic: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAATgtacgtgaat ... tgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA
EST: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAAT GGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA
genomic: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAATgtacgtgaat ... tgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA
gcatgcttagtttattattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCAC
ttagtttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgagtgtaaaagtgtaaatctacaataactaacattttgctagcatgcttagtttattattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCAC
- -tgagtgt
- - - - - - - - - - - - - - - actaaca
- - - - - - - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatg