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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttgagtgtaaaagtgtaaatctacaataactaacattttgctagcatgcttagtttattattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCAC

Basic information

species Glycine max
transcript GLYMA07G15170.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15170.4 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 5
ccttgagtgtaaaagtgtaaatctacaataactaacattttgctagcatgctta-gttta--ttattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCAC
   |||   |   | |  ||      ||||| ||    |   ||    | || | | |||  ||  ||     |  | ||||||| | || |  ||| || |||||||||| ||||| |||||| |||| ||||||| | ||||||| || ||    ||||||||||| ||||| |||||||||||  | ||||| |||||||
--ctgaaactgctaatacaagcaagaaataattatagatcaactgattttctaatgcttaatttggtgtatctacaacctgatgacactgatg-gatctgtagGGAGGATACAGGGGTTTCTATTCTCGAAATACAACTTCTTTAACACCAAAGGTCGTGAATGATATTCATAAACGTGGGGGAACCATACTTGGGACATCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208215058|gb|GE015125.1|GE015125
EST:     TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAAT                         GGAGGATATAGGGGCTTCTATGCTCGCAAT
genomic: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAATgtacgtgaat ... tgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAAT
EST: gi|151396687|gb|EV266560.1|EV266560
EST:     TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAAT                         GGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA
genomic: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAATgtacgtgaat ... tgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA
EST: gi|208034653|gb|GD834227.1|GD834227
EST:     TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAAT                         GGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA
genomic: TGTGTGGCTTACACCATATGTATGGGGTGAAGAGAGTTCTTGGAATCAATgtacgtgaat ... tgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgcttagtttattattggtctcatcaactgatgaaaatgttttgatgtgaagGGAGGATATAGGGGCTTCTATGCTCGCAATACAATTACTTTAACCCCTAAAAGTGTGAATGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCAC
      ttagtttattatt  TA-rich tract