Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG

Basic information

species Glycine max
transcript GLYMA07G10000.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G10000.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 3'ss of exon 6
gtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctacta------tagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG
   ||     ||  | ||  || |   |||   || ||||     || || | || ||||  |  || |  |  ||  ||||| |||        |||| || ||| ||||||||||||| |||||||| || ||  ||||||| ||||| ||||| ||||| ||||| || || |||
--gtgggccaacgcttaaccaaatattatta--actggtt-----ttctgctgct-gtttattcccagcaaactaa-cttgccaactgcatctgcagGAATTGTCATCAGATTCATCTCAGCATGTTCGTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAG

upper sequence: GLYMA07G10000.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G102858_T01 (Zea mays), 3'ss of exon 6
--gtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG
  || | ||  ||  | | ||| | |   ||||    || |   ||   ||  |   |||  | |||  |||  |    ||||    | |||||| |||||| ||||||||||||| |||||||| || ||  |||| || ||||| ||||| ||||| || || || || |||
gtgtgtttaagcattgcacaaacact---attg----agctctgcaccaatatt--cagt--ggtta--acttgtgccttttgtactc-atagGAATTATCATCAGATTCATCTCAGCATGTTCGTTCAGCTTTGGCATCGGTTATTATGGGAATGGCTCCTGTATTGGGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258560|gb|BG881468.1|BG881468
EST:     GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|8285673|gb|BE023232.1|BE023232
EST:     GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCCGTT
genomic: GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|192310534|gb|FG999543.1|FG999543
EST:     GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|207846884|gb|GD819103.1|GD819103
EST:     CCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: CCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|193364266|gb|FK332228.1|FK332228
EST:     ATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCAACTAGGCTTCTG
genomic: ATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCA-CT-GGCTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG
                              aactgat  putative branch site (score: 3)
                                         tttgcct  putative PPT
       atttatgata  TA-rich tract