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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtgtatttcactttggttaaatgacagttgtttacttttatgctttccaatataaattcttatgaataatttctcattgtaaaattgtgcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGGGACTGGCTTGGGCCTGGGCCCTCCTGTTGCCTCTCTGTATGTGACAGAG

Basic information

species Glycine max
transcript GLYMA07G09270.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452778|gb|BM954188.1|BM954188
EST:     AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAG                         TGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
genomic: AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgttatacttc ... gcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
EST: gi|26058787|gb|CA801701.1|CA801701
EST:     AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAG                         TGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
genomic: AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgttatacttc ... gcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
EST: gi|192294070|gb|FG986159.1|FG986159
EST:     AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAG                         TGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
genomic: AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgttatacttc ... gcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaatataaattcttatgaataatttctcattgtaaaattgtgcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGGGACTGGCTTGGGCCTGGGCCCTCCTGTTGCCTCTCTGTATGTGACAGAG
                                              cattttc  CT-rich tract
     aatataaattcttatg  TA-rich tract