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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttacctagaaattgcttctgattaggaaaatttgtgcatcctaattgtgatttattgcttcccagTCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAG

Basic information

species Glycine max
transcript GLYMA07G08570.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08570.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G030299_T02 (Zea mays), 3'ss of exon 4
gtgagttacctagaaattgcttctga---ttaggaaaa--tttgtgcatcctaattgtgatt----tattgcttcc---cagTCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAG
|| |  ||  ||  ||  | ||   |   |||    |   ||| ||        |||| |||    ||   ||| |   ||||| ||||| || ||||||||||||||||||||||| ||||  ||||||  |||||| | |||||||   ||||| || || ||||| ||
gtaa-ctatatacgaaaggttttcaagctttaattcaccctttttgttattcttttgtaattaacataactctttctgtcagTCAGATTTGGGAAGGAAGCTTGCTGAAATGCATAAGGCTGCTAAATCTGATAAAGGATATGGTTTCCCGGTTGACAATACTATTGGAAG

upper sequence: GLYMA07G08570.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv15s0048g01810.t01 (Vitis vinifera), 3'ss of exon 4
gtgagttacctagaaattgcttctgattaggaaaatttgtgcatcctaattgtgatt--tattgcttcccagTCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAG
||||| | |    || || |||   ||||  |   |     ||   |   | | | |  ||||| ||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||| || ||||||||||| ||||| || ||
gtgaggttcgacaaattttcttgacattattatggtgataacaatttg-ctataactgttattggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcttctgattaggaaaatttgtgcatcctaattgtgatttattgcttcccagTCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAG
                            tcctaat  putative branch site (score: 2)
                                            ttgcttccc  putative PPT
                               taattgtgatttatt  TA-rich tract