1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttgaagatgattcttttttttttttgtatctttacaataaaacagacttgtatgggatttaagcagtttatttttggtggaaccttttgcactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAAGGAATGCCACCTTTCAAAGGGTTCTGGAAACTGGAAGGGAATTTGATC
species | Glycine max |
transcript | GLYMA07G08370.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAG GCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAEST: gi|6667941|gb|AW279392.1|AW279392
genomic: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAGgtgccgtttg ... cactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAA
EST: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAG GCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAEST: gi|192313685|gb|FK007305.1|FK007305
genomic: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAGgtgccgtttg ... cactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAA
EST: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAG GCTTGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAEST: gi|254321708|gb|GR825025.1|GR825025
genomic: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAGgtgccgtttg ... cactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAA
EST: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAG GCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAEST: gi|254321707|gb|GR825024.1|GR825024
genomic: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAGgtgccgtttg ... cactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAA
EST: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAG GCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAEST: gi|31457799|gb|CD399827.1|CD399827
genomic: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAGgtgccgtttg ... cactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAA
EST: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAG GCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAA
genomic: CTGGACTTGAGAAAGAACTAGAAGCACTGATTACTGATAATCAGATACAGgtgccgtttg ... cactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAA
gacttgtatgggatttaagcagtttatttttggtggaaccttttgcactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAAGGAATGCCACCTTTCAAAGGGTTCTGGAAACTGGAAGGGAATTTGATC
ccttttgc CT-rich tract
agtttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaagatgattcttttttttttttgtatctttacaataaaacagacttgtatgggatttaagcagtttatttttggtggaaccttttgcactttgcagGCTCGAATTGATTCGCACAACAAAATTTTGTATGCGCGGCATGCAGATCAAAGGAATGCCACCTTTCAAAGGGTTCTGGAAACTGGAAGGGAATTTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttg