1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtacttcacctcttacttattttagtgcattttgaacatgtattacagtttgtaatggacaaatatttgaaatctaagttgtttgattactgttcccagGTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGACAAGCATTGAATCACTTATAAAGGATCCAGCTTCTGGCAGAAACAG
species | Glycine max |
transcript | GLYMA07G08360.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGACAGAGGTCTTATAGGAGTCTGTCATGATTG GTGTGAACCTTTGTCAACATATCCTCGCACCTATGATCTGATTCACGCGACEST: gi|15287862|gb|BI471753.1|BI471753
genomic: TTTGACAGAGGTCTTATTGGAGTCTATCATGATTGgtgagttttt ... ctgttcccagGTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGAC
EST: ACTCTTGATGCAATCTTTGACAGAGGTCTTATTGGAGTCTATCATGATTG GTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGACEST: gi|9902721|gb|BE611689.1|BE611689
genomic: ACTCTTGATGCAATCTTTGACAGAGGTCTTATTGGAGTCTATCATGATTGgtgagttttt ... ctgttcccagGTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGAC
EST: ACTCTTGATGCAATCTTTGACAGAGGTCTTATTGGAGTCTATCATGATTG GTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGAC
genomic: ACTCTTGATGCAATCTTTGACAGAGGTCTTATTGGAGTCTATCATGATTGgtgagttttt ... ctgttcccagGTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGAC
acagtttgtaatggacaaatatttgaaatctaagttgtttgattactgttcccagGTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGACAAGCATTGAATCACTTATAAAGGATCCAGCTTCTGGCAGAAACAG
gtttgat putative branch site (score: 5)
ctgttccc putative PPT
aaatatttgaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtacttcacctcttacttattttagtgcattttgaacatgtattacagtttgtaatggacaaatatttgaaatctaagttgtttgattactgttcccagGTGTGAACCTTTCTCAACATATCCTCGCACCTATGATCTGATTCACGCGACAAGCATTGAATCACTTATAAAGGATCCAGCTTCTGGCAGAAACAG
- - cttcacc
- - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg