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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctagaaattttgagttgattacagtttattctattcagagttttctgcaggatttctattgttaattgctttgttcattttagttttgtgtttatattgattggtcatgttatgcctattttgtagATATGTCGTGCGTTAAATTATTTACATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTG

Basic information

species Glycine max
transcript GLYMA07G08320.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963611|gb|BM270358.1|BM270358
EST:     GGATGCACCAACACATGCCTATCATTTATGTGCAACTTTATACCTACCAG                         ATATGTCGTGCGTTAAATTATTTACATCAAGTGATTGGTGTTTGTCATCGT
genomic: GGATGCACCAACACATGCCTATCATTTATGTGCAACTTTATACCTACCAGgtaagtctag ... tattttgtagATATGTCGTGCGTTAAATTATTTACATCAAGTGATTGGTGTTTGTCATCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcattttagttttgtgtttatattgattggtcatgttatgcctattttgtagATATGTCGTGCGTTAAATTATTTACATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTG
                       tattgat  putative branch site (score: 3)
 cctatttt  putative PPT
 attttagttttgtgtt  TA-rich tract