Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttgacaatatatataccagtggtttttaataaaaaaaaaaggggattctttttttgtatgcgcttttattaattgtaccccacttgattcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATGAGGAACCTGTTTGCACCAGACCTTTCAGTTTTGACTTTGAGCAACCATC

Basic information

species Glycine max
transcript GLYMA07G07270.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17154121|gb|BM144054.1|BM144054
EST:     TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAG                         TTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
genomic: TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAGgtaaaatgac ... ttcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
EST: gi|120492832|gb|EH220999.1|EH220999
EST:     GA-TTGNCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAG                         TTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
genomic: GATTTG-CTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAGgtaaaatgac ... ttcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
EST: gi|13480224|gb|BG509567.1|BG509567
EST:     TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAG                         TTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
genomic: TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAGgtaaaatgac ... ttcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
EST: gi|254315199|gb|GR830192.1|GR830192
EST:     TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAG                         TTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
genomic: TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAGgtaaaatgac ... ttcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
EST: gi|120492447|gb|EH220614.1|EH220614
EST:     TCCACACAGGCGAATTACAG                         TTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
genomic: TCCAAACAGGCGAATTACAGgtaaaatgac ... ttcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
EST: gi|16344313|gb|BI969908.1|BI969908
EST:     TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAG                         TTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
genomic: TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAGgtaaaatgac ... ttcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
EST: gi|120530146|gb|EH258280.1|EH258280
EST:     TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAG                         TTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG
genomic: TGATTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGAATTACAGgtaaaatgac ... ttcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattctttttttgtatgcgcttttattaattgtaccccacttgattcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATGAGGAACCTGTTTGCACCAGACCTTTCAGTTTTGACTTTGAGCAACCATC
                                             ttcttttc  CT-rich tract
                     ttttattaattgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcttgacaatatatataccagtggtttttaataaaaaaaaaaggggattctttttttgtatgcgcttttattaattgtaccccacttgattcttttcagTTGATGAGGCGTTGAGCCACCCATACATGGCACCTCTCCATGACATCAATGAGGAACCTGTTTGCACCAGACCTTTCAGTTTTGACTTTGAGCAACCATC

- cttgaca
- - - - - - - - - - agtggtt
- - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccact