Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG

Basic information

species Glycine max
transcript GLYMA07G06580.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 3'ss of exon 5
gtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
|||   ||    |   |||  | ||| | | | |     |    |  |  |||   ||  | ||  |||  |||||  |   |||  |||||| ||||| ||||| || |  || ||||| |||||    |||||||| |||||||||||| | |||||||| || |||||||| || || || |||||||
gtacaaatataatccttataatttttttactcta-----tatgctcatgctggtcttg--atct--tgatatgtatgattcctttggtcagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 5
gtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
     ||  | || ||||     |||    |  |     |||   | |       || |  ||   |   |||| |||| |  ||  |||||| ||||| ||||| |  || || || || |||||    |||||||| |||||||||||| | |||||||| ||||||||||||||||| || |||||||
----gtaaaatttggctaaa---tttcgatcttattttttgctgatgtcacattggt-tgggcatttatattgtttcttttcgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATTAGGACTACAACTGGGAACCGTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 5
gtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
|||    |  |     |||    | | |     |     ||   ||   |||| |  |||   |  |||   |  |||| || ||  |||||| ||||| ||||| |  || || || || |||||    |||||||| |||||||||||| | |||||||| ||||| ||||||||||| || |||||||
gtaaaatttggccaaatatataatct-tattttaatatctgatgttgcattggtttggta--tttctga--cggttctttttgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G090738_T01 (Zea mays), 3'ss of exon 5
-------------gtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatc--ttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
               || | | | |||  | ||||   |||        |  ||   ||  ||||| ||   ||  | |  | ||||     || | | || |||||| ||||| ||||| |  || || || || || ||    |||||||| |||||||| ||| | ||||| || |||||||||||||| || || |||||||
gtaaaattaaaacaaatatttaaatttattctgcttgctgtttttttttg--tgatattgctttgggtgaacaa-ttgagcatttgtgatgattttctgttatcagGCCACTGGTGAGGACTTCTCTGTCGAGCCAGCGGAAGAGAGGAGGCCTTTCCGTGCCCTCTTAGATGTCGGCCTTATTAGGACTACTACTGGAAACCGTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G39740.2 (Arabidopsis thaliana), 3'ss of exon 5
gtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttt--tcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
|||| |     | |  |||    | |       |  ||          |||   | | |    |||| |  || |||  | ||  |   |||||| ||||||||||| | ||| ||||||||  ||||   ||| || || ||||||||||| ||||||||||| ||||| |||||||| || || |||||||
gtatgttgtgatcttttatttcatcttgaaaataaagaaacttgagagttttcatcttttgattaat-aactgaatcaaaattgatgaatcagGCCACTGGAGAGGACTTTTCTGTGGAACCAACTGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 4
gtat-ttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
|||| || || | ||| | |  | ||  |     |   ||   | || || | |     |  | ||   | |    ||  |   |   |||||| |||||||| || | |||||| || ||  ||||    ||||| || ||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||
gtatgttgtgtgattggtttcatcttgat-----aataagaagcattgttattgtctctt--gttagaaactcaagtcacacaatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 5
-------------------gtatttatgagtttgct-atgctgtttgtgccccagcgagtgcctttcttttggctgtgtaa----gctaatgagttgtat----cttattt---tttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
                   ||  ||     ||   | ||| | | |  | | ||  |   || | |  | |     ||||     | | || | || | |    | || ||    || | |||| ||||| |||||||| || || |||||  | || |||||||||||||||||||| || ||||||||||| ||| | || || ||||| || |||||||
gtacaattgttagatatctgtgctttccttttctttcatggtttcttggtctcaaggttggcttgttctgtaaagatgtagttttgatgatcacttatctgatgcgtacttgtacttcttagGCAACTGGTGAGGATTACTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180774|gb|HO022213.1|HO022213
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAGTGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|7233784|gb|AW569127.1|AW569127
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCATGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|207824520|gb|GD794216.1|GD794216
EST:     CTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: CTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|193438676|gb|FK401001.1|FK401001
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCAT
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCAT
EST: gi|208094364|gb|GD897001.1|GD897001
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|9564071|gb|BE473580.1|BE473580
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|33387329|gb|CA850536.1|CA850536
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|7478382|gb|AW666243.1|AW666243
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|38192446|gb|CF921652.1|CF921652
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10231886|gb|BE800774.1|BE800774
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192328302|gb|FK020013.1|FK020013
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10232170|gb|BE801058.1|BE801058
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192333617|gb|FK025434.1|FK025434
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151409715|gb|EV279523.1|EV279523
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10846870|gb|BF069669.1|BF069669
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192333816|gb|FK025077.1|FK025077
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|26058287|gb|CA801201.1|CA801201
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|18721850|gb|BM523372.1|BM523372
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|208295724|gb|GE091847.1|GE091847
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24205962|gb|BU965215.1|BU965215
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|17964387|gb|BM271123.1|BM271123
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|22523868|gb|BU082679.1|BU082679
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10848276|gb|BF070811.1|BF070811
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24205862|gb|BU965115.1|BU965115
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|17153690|gb|BM143623.1|BM143623
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|15285156|gb|BI469047.1|BI469047
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24205298|gb|BU964551.1|BU964551
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGG
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGG
EST: gi|151397139|gb|EV267012.1|EV267012
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|33388021|gb|CA851228.1|CA851228
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|26045622|gb|CA783155.1|CA783155
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GTTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|16346338|gb|BI971933.1|BI971933
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6502218|gb|AW203591.1|AW203591
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|4396042|gb|AI495039.1|AI495039
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151411465|gb|EV281276.1|EV281276
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|208080424|gb|GD877186.1|GD877186
EST:     CTTGAAATGGATTGTAGGTAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: CTTGAAATGGA-TG-AGG-AGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|27426959|gb|CA938479.1|CA938479
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGATATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24136031|gb|BU926541.1|BU926541
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|38193290|gb|CF922496.1|CF922496
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|38192834|gb|CF922040.1|CF922040
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6481795|gb|AW201066.1|AW201066
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6567363|gb|AW234974.1|AW234974
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|5753627|gb|AI960914.1|AI960914
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGCTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|9819571|gb|BE555084.1|BE555084
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|18692813|gb|BM521661.1|BM521661
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|213590604|gb|DB973335.1|DB973335
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|298199535|gb|HO042898.1|HO042898
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6665970|gb|AW277429.1|AW277429
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|15662084|gb|BI699455.1|BI699455
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|14259966|gb|BG882874.1|BG882874
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGCGGAACCTGCTGAGAGCAAGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|23729388|gb|BU762778.1|BU762778
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|17998752|gb|BI119562.1|BI119562
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAAGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151410521|gb|EV280336.1|EV280336
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG
                        agctaat  putative branch site (score: 3)
                                     tatcttattttttttc  putative PPT
                                  ttgtatcttatttttt  TA-rich tract