1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtcttaaaagatgcattagatcatagatgcataagttcacttctttgctttatctttttctcatttccctgcagtattctttaacaccatttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTTTATCA
species | Glycine max |
transcript | GLYMA07G06230.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC-- T---GTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCATEST: gi|120497096|gb|EH225263.1|EH225263
genomic: GTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTGgtaaattctt ... ttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCAT
EST: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCCTGEST: gi|9204008|gb|BE330232.1|BE330232
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: TGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC--EST: gi|308222668|gb|HO760643.1|HO760643
genomic: TGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCC-AATGCCTGEST: gi|302141431|gb|HO212307.1|HO212307
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCC-AATGCCTGEST: gi|120495877|gb|EH224044.1|EH224044
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC--EST: gi|19452386|gb|BM953796.1|BM953796
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC--
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
tgctttatctttttctcatttccctgcagtattctttaacaccatttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTTTATCA
ctttaac putative branch site (score: 3)
tttgttt putative PPT
tattctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttaaaagatgcattagatcatagatgcataagttcacttctttgctttatctttttctcatttccctgcagtattctttaacaccatttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTTTATCA
- - - - - -tgcatta
- - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccat