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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgtttcttggtatttcattttgaatttgatttatctactccagttcttcacatttactcaatcttcttcagGTACATGATATCATCCAATATTGGGGAAGTAATATCCATATTCTTGACTGCTGCTCTAGGGATCCCAGAATGCATGATATCAGTGCAACTTCTGTGGGTG

Basic information

species Glycine max
transcript GLYMA07G05890.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05890.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttatgtttc---ttggtatttcattttgaatttgatttatctactccagttcttcacatttactcaatcttcttcagGTACATGATATCATCCAATATTGGGGAAGTAATATCCATATTCTTGACTGCTGCTCTAGGGATCCCAGAATGCATGATATCAGTGCAACTTCTGTGGGTG
|||| | |||| |    || || |||  |||    || |  |  || ||  |    |||||  |   |||||| | |   ||||| |||||||| |||||| ||||||| || |||||||| ||||| |||||||| ||  | || |||||||| |||||| | ||||| ||||||||||| 
gtatat-atgtcttaagttcgttttttttttccctttcgggtagtcaacatctaaccttca-gtgacctcaatatgc---agGTATATGATATCTTCCAATGTTGGGGAGGTTATATCCATTTTCTTAACTGCTGCACTGAGCATACCAGAATGTATGATACCTGTGCAGCTTCTGTGGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaatttgatttatctactccagttcttcacatttactcaatcttcttcagGTACATGATATCATCCAATATTGGGGAAGTAATATCCATATTCTTGACTGCTGCTCTAGGGATCCCAGAATGCATGATATCAGTGCAACTTCTGTGGGTG
       atttgat  putative branch site (score: 5)
                                             tcttcttc  putative PPT
      aatttgatttatcta  TA-rich tract