1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgtgtaatcatcttcttaacttcttgtaaacttcttattgtataaacctccttcacaagcaactggaatcatttttttaatttaatcttccttatgcagGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAAGCTTTCTTCCCTCTCTACATT
species | Glycine max |
transcript | GLYMA07G05230.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCT GAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAAEST: gi|193344980|gb|FK311606.1|FK311606
genomic: AATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCTgtgtgtaatc ... ccttatgcagGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAA
EST: AATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCT GAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAAEST: gi|5606215|gb|AI900313.1|AI900313
genomic: AATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCTgtgtgtaatc ... ccttatgcagGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAA
EST: AATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCT GAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGGTGATTTCCAAAA
genomic: AATGGGGCAATCCCCTATTCCCTTTCTGAAAAGACTTCGCTTATAGTCCTgtgtgtaatc ... ccttatgcagGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAA
aacctccttcacaagcaactggaatcatttttttaatttaatcttccttatgcagGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAAGCTTTCTTCCCTCTCTACATT
tcttccttat CT-rich tract
aatcatttttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaatcatcttcttaacttcttgtaaacttcttattgtataaacctccttcacaagcaactggaatcatttttttaatttaatcttccttatgcagGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAAGCTTTCTTCCCTCTCTACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG