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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatccttcttgctgtagtctgcttgttcattctatttttcatttatctgttccattccattttgaatttgaaaaagtttatatttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT

Basic information

species Glycine max
transcript GLYMA07G05170.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 3'ss of exon 5
--gtaatcc--ttcttgctgtagtctgcttgttcattctatttttcatttatctgttccattccattttgaatttgaaaaagtttatatttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT
   |  |||  |  || ||  |   |   | |  |   || | ||   | || |  |   | |  ||||  | |  |  || | | | | | | |     || ||||||||||| ||||| || |||||||||||||| || || ||||| ||||||||||| |
gtatgttccaatggttcctccaaattcagtctcaacattactcttacctcattt--tttgtccagttttttaatgaaccaaatctttttctgtttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATT

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------gtaatccttc-ttgctgtagtctgcttgttcattctatttttcatttatctgttccattccattttgaatttgaaaaagtttatatttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT
                                  | |||  |   ||||| |   | ||    |  | ||  | || || |||   |    || | |||| | ||| |  | ||||   | |||    ||||||||||| || || ||||||||||| |||||||| || || ||||| || || |||||||| |
gtattctgtattctggctacttcaattttcccaagaaatattctgttgcttttagcagcagtattttacttatattaatgtattcatgtagttgc-ttttaattttaatgacgttttcctctct----tgtagCATGACCACTCCCAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193518256|gb|FK476597.1|FK476597
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGA
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGA
EST: gi|213589359|gb|DB961692.1|DB961692
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|193367615|gb|FK332077.1|FK332077
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTTGT
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTT-GT
EST: gi|208189947|gb|GD990021.1|GD990021
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|193362954|gb|FK327934.1|FK327934
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGNTCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|120495095|gb|EH223262.1|EH223262
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|24205463|gb|BU964716.1|BU964716
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACACAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|208045851|gb|GD847707.1|GD847707
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGNTCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|207707971|gb|GD692496.1|GD692496
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|9902562|gb|BE611593.1|BE611593
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAANAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|7692130|gb|AW760244.1|AW760244
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|298173240|gb|HO020224.1|HO020224
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACA
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACA
EST: gi|298163944|gb|HO013589.1|HO013589
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACA
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACA
EST: gi|120491908|gb|EH220075.1|EH220075
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|193440118|gb|FK408519.1|FK408519
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAAGAAAA-GATCTGTTTGT
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACA-GAAAAAGATCTGTTTGT
EST: gi|9264559|gb|BE352706.1|BE352706
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
EST: gi|192331929|gb|FK026713.1|FK026713
EST:     GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG                         CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: GGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatctgttccattccattttgaatttgaaaaagtttatatttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT
                                       tatttct  CT-rich tract
                 attttgaatttgaaaa  TA-rich tract