1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgggataaggtttttgctgctgctgttgtttgtacctagttgatttctatatcaacatattgggtgtcatatgcttattaatttcattgattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTGGGCATGTCTCTATCTGTCA
species | Glycine max |
transcript | GLYMA07G04830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCAEST: gi|298184473|gb|HO029686.1|HO029686
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCA
EST: CATGGCAAGCTCTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGAEST: gi|298163373|gb|HO012106.1|HO012106
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGA
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGAEST: gi|192318066|gb|FK007180.1|FK007180
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGA
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCAEST: gi|193701908|gb|FK639592.1|FK639592
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCA
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGACGCAEST: gi|192322997|gb|FK016728.1|FK016728
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCA
EST: ATGGCAAGCTTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCAEST: gi|58014519|gb|CX701261.1|CX701261
genomic: ATGGCAAGC-TTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCA
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCAEST: gi|192318065|gb|FK007179.1|FK007179
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCA
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCAEST: gi|192325825|gb|FK018047.1|FK018047
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCA
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCAEST: gi|298177341|gb|HO027122.1|HO027122
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCA
EST: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAG ATTCCTCTAGCTCGA
genomic: CATGGCAAGCTTTTGTTTATGTGCCTGAAGGCAACTGGTACATTACCAAGgtaagttcta ... gattggccagATTCCTCTAGCTCGA
tttctatatcaacatattgggtgtcatatgcttattaatttcattgattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTGGGCATGTCTCTATCTGTCA
ttattaatttcattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgggataaggtttttgctgctgctgttgtttgtacctagttgatttctatatcaacatattgggtgtcatatgcttattaatttcattgattggccagATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAATGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTGGGCATGTCTCTATCTGTCA
- - - - - - - - - ctgctgc
- - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc