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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttttctctgttttttttaagaaattattttgagattatcaatataaataatagtgtacttaatgattttatcaccaacactggtgaatatatttcagATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAG

Basic information

species Glycine max
transcript GLYMA07G03930.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27809080|gb|CB063502.1|CB063502
EST:     GAGAGGCTATGCGTCAGCCTCAG                         ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA
genomic: GAGATGCTATGCGTCAGCCTCAGgtacagttca ... tatatttcagATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA
EST: gi|213616567|gb|DB965737.1|DB965737
EST:     TTCACAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAG                         ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA
genomic: TTCACAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAGgtacagttca ... tatatttcagATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA
EST: gi|19269403|gb|BM885659.1|BM885659
EST:     TTCACAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAG                         ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA
genomic: TTCACAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAGgtacagttca ... tatatttcagATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA
EST: gi|209714755|gb|BW654105.1|BW654105
EST:     TTCACAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAG                         ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA
genomic: TTCACAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAGgtacagttca ... tatatttcagATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaataatagtgtacttaatgattttatcaccaacactggtgaatatatttcagATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAG
              acttaat  putative branch site (score: 4)
             tacttaatgattttat  TA-rich tract