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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgaacgttttatagtctatttcattggttgtgtatctgccttttgattcatttgcttgaagtcattttttttctttgtatatttcatgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA

Basic information

species Glycine max
transcript GLYMA07G03890.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G124886_T04 (Zea mays), 3'ss of exon 5
gtgggtgaacgttttatagtctatttcattggttgtgtatctgccttttgattcatttgcttgaagtcattttttttctttg-tatatttcatgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
                                          |  |  | |  ||  |   ||    | | || |   |  | | || ||||||   || |||| ||  |  | ||| ||||| | || || || ||||||||||| || || ||||||||||| || || ||||||||||| || ||||| || || || ||||||||||| || || ||
------------------------------------------gtatgctcacccaactttctgtgtgcttcttgtccgtgaggtttacttcatg---ctaatattcaataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGATGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G141587_T01 (Zea mays), 3'ss of exon 5
gtgggtgaacgttttatagtctatttcattggttgtgtatctgccttttgattcatttgcttgaagtcattttttttctttgtatatttcatgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
                                       | |||      | |  | ||||||       | ||    |  || ||  |||||   || |||| |   |  | ||| ||||| | || || || ||||||||||| || || ||||||||||| || || || |||||||| || ||||| || || || ||||||||||| || || ||
--------------------------------------gtatgcacaaccaattttctgcttg---cttctcttcccttaggtttacatcatg---ctgatattccataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGACGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgggtgaacgttttatagtctatttcattggttgtgtatctgccttttgattcatttgcttgaagtcattttttttcttt-gtatatt--tcatgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
    ||  |||  || |  ||| ||   |   |||| ||| |   |   | ||   |||  || | | | |  |  | | | || | ||  | ||    ||  | || |  |||| ||||||||| |||||||||||||| | ||||| || || |||||||| ||||| || |||||||||| ||| |||||||| ||||||||||| ||||| || |||||
----gtatacggcttttgttcttttgtgtcttttgt-tatattgttcaagtttttgttgtatgtactaagtactcgtgtctagtttgttacttattctgcttttttatattatgactttgcagTTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTGATGATATGTATATCCGTGTATACAATTACAACACCATGGACAAGGTTAA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 5
gtgggtgaacgttttatagtctatttcattggttgtgtatctgccttttgattcatttgcttgaagtcattttttttc-tttgtatatttca-tgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
  |  | |    |||||   |   |||  || ||   |   |     ||  |||| |||||  |  |    || | |  | |||   | | | ||    | |||||     ||| |||||||||||||| |||||||||||| | ||||| || |||||||| || || || ||||||||||  || |||||||| |||||||| |||||||| || || ||
--gtataacaagtttatgagcatcttc--tgatttcattgttatagattt-ttcacttgctgtatattgccttgtatagtctgtcgctgttactgaaatttatata-----tgactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGGATGATATGTACATCCGTGTATACAATTACAATACAATGGACAAGGTCAA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgggtgaacgttttatagtctatttcattggttgtgtatctgccttttgattcatttgcttgaagtcattttttttctttgtatatttcatgggtctcatatacagcatgattttg--cagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
                                       | ||   | |    ||| |  |||   || || || ||||||    |  ||||  ||   || |    | || | |||  ||||| ||||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||||||||||| || || |||||||| ||||||||  | ||
--------------------------------------gtatgatatatag--catctcattgt--tccttcttattcttt-cgcacatcatttgttgaatctctgtcctggtgttgtgcagTTCGGTCAGCAAAGTTCATTGCACGGAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACACTATGGATAAGATCAA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
gtgggtgaacgttttatagtctatttcattggtt-------gtgtatctg---ccttttgattcatttgcttgaagtcattttttttctttgta----tatttcatgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
||  ||  | ||  | ||     || |||  | |       ||||   ||    |  ||||| |||||      | |  | | | || || |||    |||| ||||  ||   | ||||  || |||  |||||||||||||| |||||||| |||||||| || ||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||| |||||
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatt-tctctcttattggtaaggttattacatgtttcaattttacattatcatt--gcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcattttttttctttgtatatttcatgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA
     tttttttctttgtata  TA-rich tract