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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgacactgatgagttattaaagaaaccaaaagtacaacaatggaatcttttagagtattagttaacatgaccctgaattgggtgtactattgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTTCCAGACACAAATAAAATTATAACCAAATGTGCTATGATTGGTAATTTGT

Basic information

species Glycine max
transcript GLYMA07G03360.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03360.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g06980.t01 (Vitis vinifera), 3'ss of exon 6
tttgacactgatgagttattaaagaaaccaaaagtacaacaatg-gaatcttttagagtattagttaacatgaccctgaa--ttgggtgtacta--ttgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTTCCAGACACAAATAAAATTATAACCAAATGTGCTATGATTGGTAATTTGT
      || |  ||  ||  | | |   |  |||        |  | ||||||   | | | |  ||| |         |  ||      | |   ||  || ||||  | || |||||  |||||||||| || ||||| ||  ||||||||||||||||||||||||   | ||   || ||||||| |||| |||||  || 
-----aacgggagaaataaaacaaatttcttaagctttcttttctgtatctttaccactgtcatgtaaaacagtgaaagaagtttatctcattggcttaaggcagGGTCTAGCAGAGGAGTTGAGTAAAGAGGGTGCATGCGACAAAGCAATATTTCCAGACACAAATATTGTCATCGACAGATGTGCTCTGATCGGTAACCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253542|gb|BE821315.1|BE821315
EST:     TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAA-                         GCCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAGgtaaatagcc ... attgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
EST: gi|120494394|gb|EH222561.1|EH222561
EST:     CAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
genomic: CAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAGgtaaatagcc ... attgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
EST: gi|13478464|gb|BG507931.1|BG507931
EST:     TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAGgtaaatagcc ... attgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
EST: gi|5677994|gb|AI939124.1|AI939124
EST:     TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAA-                         GCCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAGgtaaatagcc ... attgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
EST: gi|17400157|gb|BM176939.1|BM176939
EST:     TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAGgtaaatagcc ... attgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
EST: gi|51343127|gb|CO983860.1|CO983860
EST:     TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAG                         GGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGACTTCTTTAATAAGgtaaatagcc ... attgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttttagagtattagttaacatgaccctgaattgggtgtactattgtggtagGGCTTGGCTGAGGAACTGAGTAAAGAAGGAGCATGTGAGCAAGCAATATTTCCAGACACAAATAAAATTATAACCAAATGTGCTATGATTGGTAATTTGT
                agttaac  putative branch site (score: 3)
            tattagttaa  TA-rich tract