1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...taatcaaatgcaatttaatccttgttgagtggagcatggcagtccattcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC
species | Glycine max |
transcript | GLYMA07G02180.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGGTAAACCTAAGG-AGTTGTTCATACACACAGAAGCATCATTTCCCAG -TACAAACTTTGACAAA-GCTTGGGAGTACTCATCTGCTGACCAGTTTCTGEST: gi|11687559|gb|BF595235.1|BF595235
genomic: CGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGgtatgctctg ... ttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTG
EST: CGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAG GTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGEST: gi|37996226|gb|CF807815.1|CF807815
genomic: CGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGgtatgctctg ... ttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTG
EST: CGGGTAA-CCTAGGGGAGTTGNTCATACACACAGAANCATCATTTCCCAG GTACAAACTTTG
genomic: CGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGgtatgctctg ... ttgattttagGTACAAACTTTG
attcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC
tcttgtctt CT-rich tract
tatttggttattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcaaatgcaatttaatccttgttgagtggagcatggcagtccattcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC
- - - aatgcaa
- - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - -gcatggc