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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatcaaatgcaatttaatccttgttgagtggagcatggcagtccattcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC

Basic information

species Glycine max
transcript GLYMA07G02180.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02180.2 (Glycine max), 3'ss of exon 5
lower sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------------taatcaaatgcaattt----aatccttgttgagtggagcatggcagtccattcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC------------------------------
                       | |  |||  || |    ||||         || |  |     |||      ||| |   |  | || |    | |    | ||| ||||| |   ||  ||||   ||   | ||  |||||||||||||| |||||||||| || ||||| || || || ||||||||||                              
gtatatatccgacctccttatgtagcgcatgtcatgtttcaaatctacccaacctgcaatagaatggtctgcatgtatctaaattatgatgtaccttataagctagaagcttgtatatgttgcagGTTAGAATGCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACATCATGTTCATGGGCTTTTCAACGCTTTATTTG

upper sequence: GLYMA07G02180.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 5
-taatcaaatgcaatttaatccttgttgagtggagcatggcagtccattcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC------------------------------
  | |  ||  | || ||||     |    |    | |  |  |   ||  | |||     ||   | || | |||   || | ||||| ||| |||| |||| || |  |||||| |||||||||  ||  |||||||||| || ||||||||||||||||| || ||||                              
ccacttcaaaactatgtaatttgattcccttttgacttcactttagttttgtctttaacattttgatatggaattgacctt-agtcttggcttaatttcagGTCCAGATCTTGACAGAAGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687559|gb|BF595235.1|BF595235
EST:     CGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAG                         GTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTG
genomic: CGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGgtatgctctg ... ttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTG
EST: gi|254322525|gb|GR837939.1|GR837939
EST:     CGGGTAAACCTAAGG-AGTTGTTCATACACACAGAAGCATCATTTCCCAG                         -TACAAACTTTGACAAA-GCTTGGGAGTACTCATCTGCTGACCAGTTTCTG
genomic: CGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGgtatgctctg ... ttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC
                                      tcttgtctt  CT-rich tract
     tatttggttattaatt  TA-rich tract