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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcccttggaaaatcctagtaatatatgtattatttattatttagaatatttaagggtattatttcataaattctgaaagaaatgtctaaagtttgggtgctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATAAGATACCATTCATTCTATG

Basic information

species Glycine max
transcript GLYMA07G01660.5
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311639|gb|FK003556.1|FK003556
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|15661860|gb|BI699231.1|BI699231
EST:     CACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAATACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: CACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|192315625|gb|FK007453.1|FK007453
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|31457327|gb|CD399355.1|CD399355
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|192295840|gb|FG992636.1|FG992636
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|163921205|gb|EH039507.1|EH039507
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAATACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
EST: gi|192315626|gb|FK007454.1|FK007454
EST:     GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTA                         GTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA
genomic: GACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAgtaagccctt ... gctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtattatttcataaattctgaaagaaatgtctaaagtttgggtgctgtcttagGTGGCAAAGGAGAATAGTACTACACTGCCCTCTGCGGCTTTGTTCATTATAAGATACCATTCATTCTATG
                              gtctaaa  putative branch site (score: 3)
                                              ctgtctt  putative PPT
     ttatttcataaattct  TA-rich tract